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samtools  (Pacific Biosciences)

 
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    Pacific Biosciences samtools
    Samtools, supplied by Pacific Biosciences, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/samtools/samtools/bio_rxiv__2025__10__14__682431-369-8-22
    Average 86 stars, based on 1 article reviews
    samtools - by Bioz Stars, 2026-09
    86/100 stars

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    other:

    Article Title: The complete genome of a songbird
    Article Snippet: Command-line tools were installed in a Conda environment: SAMtools (for FASTA indexing and BAM handling), BEDTools (for interval operations), PacBio utilities ( https://github.com/PacificBiosciences/pbbioconda ) including pbtk ( https://github.com/PacificBiosciences/pbtk , providing extracthifi), Jasmine ( https://github.com/PacificBiosciences/jasmine , PacBio base-modification caller; package name pbjasmine), pbmm2 ( https://github.com/PacificBiosciences/pbmm2 , HiFi alignment frontend to minimap2), and pb-CpG-tools ( https://github.com/PacificBiosciences/pb-CpG-tools , for CpG probability summarization).

    Article Title: The complex hexaploid oil‐Camellia genome traces back its phylogenomic history and multi‐omics analysis of Camellia oil biosynthesis
    Article Snippet: Then, non‐primary and chimeric read alignments were filtered using Samtools (v1.9) and ‘falconc bam‐filter‐clipped’ ( https://github.com/PacificBiosciences/pbipa ).



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